PP_4208 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

PP_4208

RNA polymerase sigma-70 factor, ECF subfamily. (158 aa)

Predicted Functional Partners:

PP_0866

0.868

PP_3555

0.850

PP_4607

0.826

PP_1007

0.823

PP_3085

0.823

PP_0161

0.822

PP_0668

0.822

PP_0700

0.822

PP_0703

0.822

PP_3576

0.822

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PP_0161	PP_4208	Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	RNA polymerase sigma-70 factor, ECF subfamily.	0.822
PP_0161	PP_4607	Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.782
PP_0668	PP_1007	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.777
PP_0668	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.822
PP_0700	PP_0703	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.548
PP_0700	PP_3576	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.556
PP_0700	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.822
PP_0703	PP_0700	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.548
PP_0703	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.822
PP_0866	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.868
PP_1007	PP_0668	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.777
PP_1007	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.823
PP_3085	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.823
PP_3555	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.850
PP_3576	PP_0700	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.556
PP_3576	PP_4208	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.822
PP_4208	PP_0161	RNA polymerase sigma-70 factor, ECF subfamily.	Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	0.822
PP_4208	PP_0668	RNA polymerase sigma-70 factor, ECF subfamily.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.822
PP_4208	PP_0700	RNA polymerase sigma-70 factor, ECF subfamily.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.822
PP_4208	PP_0703	RNA polymerase sigma-70 factor, ECF subfamily.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.822