STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fpvAOuter membrane ferripyoverdine receptor FpvA, TonB-dependent; Function of strongly homologous gene; receptor; Transport and binding proteins. (812 aa)    
Predicted Functional Partners:
tonB
Protein TonB.
  
 0.937
exbD
TonB-gated outer membrane transporter - gating inner membrane protein; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Transportandbindingproteins : Cations and iron carrying compounds.
  
 
 0.928
exbB
Biopolymer transport protein ExbB.
  
 
 0.924
pvdE
Pyoverdine ABC export system, fused ATPase and permease components; Function of strongly homologous gene; transporter; Biosynthesisofcofactors,prostheticgroups,andcarriers : Siderophores.
 
  
 0.905
PP_3085
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.832
pvdD
Non-ribosomal peptide synthetase; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
   
  
 0.827
PP_3576
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.824
PP_0161
Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.817
pvdA
L-ornithine 5-monooxygenase.
  
  
 0.790
pvdJ
Non-ribosomal peptide synthetase (subunit of ferribactin synthase); Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
   
  
 0.774
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.