STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pvdDNon-ribosomal peptide synthetase; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis. (3470 aa)    
Predicted Functional Partners:
PP_3808
Antibiotic synthesis protein MbtH.
 
 
 0.999
pvdE
Pyoverdine ABC export system, fused ATPase and permease components; Function of strongly homologous gene; transporter; Biosynthesisofcofactors,prostheticgroups,andcarriers : Siderophores.
 
 
 0.991
pvdL
Non-ribosomal peptide synthase (subunit of ferribactin synthase); Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
 
0.989
pvdA
L-ornithine 5-monooxygenase.
 
 0.988
pvdJ
Non-ribosomal peptide synthetase (subunit of ferribactin synthase); Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
 
0.986
PP_3807
Thioesterase.
  
 0.985
PP_4222
Putative SyrP protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.985
pvdI
Non-ribosomal peptide synthetase (subunit of ferribactin synthase); Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
 
0.978
PP_1955
Cytochrome P450 family protein.
 
 
 0.955
PP_1950
Homologs of previously reported genes of unknown function; Belongs to the cytochrome P450 family.
  
 
 0.949
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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