STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4240Putative Microcin b17 processing protein mcbd; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (400 aa)    
Predicted Functional Partners:
PP_5667
Putative microcin B17-like-processing protein, McbC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
   
   0.926
PP_5666
Putative microcin B17-like processing protein, McbB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
   
   0.916
PP_5668
Homologs of previously reported genes of unknown function.
       0.786
PP_5669
ABC transporter related; Function of strongly homologous gene; transporter.
       0.773
PP_5665
Putative microcin B17-like protein, McbA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
       0.594
PP_4242
Conserved protein of unknown function with Rhs repeat-associated core domain; Homologs of previously reported genes of unknown function; Unknown function.
  
    0.442
PP_3657
P-nitrobenzoate reductase NfnB.
  
   0.435
bluB
5,6-dimethylbenzimidazole synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Heme, porphyrin, and cobalamin.
   
   0.428
nfnB
6,7-dihydropteridine reductase; Function of strongly homologous gene; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
   
   0.428
ecd
Flavoprotein; Belongs to the flavin oxidoreductase frp family.
   
   0.428
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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