STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4249Homologs of previously reported genes of unknown function. (230 aa)    
Predicted Functional Partners:
ccoN-I
Cytochrome c oxidase subunit I, cbb3-type; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the heme-copper respiratory oxidase family.
       0.678
ccoS
Cytochrome oxidase maturation protein, cbb3-type.
 
     0.640
ccoO-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
       0.622
ccoQ-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
       0.622
ccoP-I
Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
       0.622
PP_4261
Cation-transporting P-type ATPase; Function of strongly homologous gene; transporter; Energymetabolism : Aerobic.
  
    0.573
PP_4263
Putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Energy metabolism.
       0.550
thiD
Phosphomethylpyrimidine kinase.
  
    0.546
PP_4260
Homologs of previously reported genes of unknown function.
       0.544
PP_1747
Conserved protein of unknown function, UPF0270 family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0270 family.
 
     0.459
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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