Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ccoQ-IICytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme. (63 aa)    
Predicted Functional Partners:
ccoO-II
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
 
  
 0.991
ccoP-II
Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.986
ccoN-II
Cytochrome c oxidase subunit I, cbb3-type; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.952
ccoQ-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
    
 
0.943
ccoN-I
Cytochrome c oxidase subunit I, cbb3-type; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.893
PP_2675
Cytochrome c-type protein.
  
 
 0.866
ccoP-I
Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.866
ccoO-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
 
  
 0.861
PP_4260
Homologs of previously reported genes of unknown function.
 
  
 0.811
PP_4254
Homologs of previously reported genes of unknown function.
  
    0.774
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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