STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4260Homologs of previously reported genes of unknown function. (176 aa)    
Predicted Functional Partners:
PP_4259
Iron-sulfur cluster-binding protein.
 
  
 0.930
ccoP-II
Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.875
PP_4263
Putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Energy metabolism.
 
   
 0.870
ccoP-I
Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.847
ccoS
Cytochrome oxidase maturation protein, cbb3-type.
 
     0.843
ccoQ-II
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
 
    0.774
PP_4261
Cation-transporting P-type ATPase; Function of strongly homologous gene; transporter; Energymetabolism : Aerobic.
 
  
 0.772
PP_3543
Iron-sulfur cluster-binding protein.
 
  
 0.735
PP_0629
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.733
PP_4777
Homologs of previously reported genes of unknown function.
  
    0.701
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.