Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fnrADNA-binding transcriptional dual regulator; Function experimentally demonstrated in the studied strain; regulator; Energymetabolism : Anaerobic. (244 aa)    
Predicted Functional Partners:
ccoO-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
 
  
 0.769
hemN
Oxygen-independent coproporphyrinogen III dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Heme, porphyrin, and cobalamin; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.755
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
  
 0.730
PP_3232
Acetyltransferase, GNAT family.
  
  
 0.692
PP_3289
Acetyltransferase, GNAT family.
  
  
 0.691
crp
DNA-binding transcriptional dual regulator; Function experimentally demonstrated in the studied species; regulator; Transcription.
  
   
 0.658
ccoP-I
Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.652
ccoQ-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
  
  
 0.642
PP_3290
Universal stress protein family.
 
  
 0.590
PP_3238
Putative Transcriptional regulator PyrR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.564
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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