STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4295TetR family transcriptional regulator. (203 aa)    
Predicted Functional Partners:
yceG
Septation protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
      
 0.851
PP_1964
Putative dGMP, dTMP, dhydroxyCMP kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
      
 0.819
holB
DNA polymerase III subunit delta'.
  
   
 0.779
yedI
Conserved inner membrane protein; Homologs of previously reported genes of unknown function; putative membrane component; Unknown function.
       0.645
pydA
NADP-dependent dihydropyrimidine dehydrogenase subunit PreA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Central intermediary metabolism.
 
     0.515
xdhC
Xanthine dehydrogenase accessory factor; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
     0.513
PP_1931
Homologs of previously reported genes of unknown function.
      
 0.504
PP_1960
Homologs of previously reported genes of unknown function.
      
 0.504
PP_1962
Site-specific recombinase, phage integrase family.
      
 0.504
PP_5490
Site-specific DNA recombinase; Function of strongly homologous gene; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Prophage functions.
      
 0.504
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.