STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4307Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins. (307 aa)    
Predicted Functional Partners:
PP_4308
Transcriptional regulator, AsnC family.
 
  
 0.823
PP_4306
Homologs of previously reported genes of unknown function; Belongs to the methyltransferase superfamily.
       0.773
PP_3192
Homologs of previously reported genes of unknown function.
  
     0.597
PP_1501
Homologs of previously reported genes of unknown function.
      
 0.575
PP_2951
Transcriptional regulator, TetR family.
      
 0.575
PP_2121
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.552
PP_0590
Transcriptional regulator, ArsR family.
 
     0.514
PP_4512
Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
     0.461
PP_3069
Outer membrane autotransporter.
  
     0.425
PP_4973
Homologs of previously reported genes of unknown function; Unknown function.
  
    0.407
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.