STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4308Transcriptional regulator, AsnC family. (145 aa)    
Predicted Functional Partners:
PP_4307
Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
 
  
 0.823
hsdS
Type I restriction-modification system, S subunit.
      
 0.819
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
      
 0.781
PP_5188
Putative transcriptional regulator (AsnC/Lrp family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.776
bkdR
Bkd operon transcriptional regulator; Function experimentally demonstrated in the studied species; regulator; Regulatory functions.
  
     0.773
PP_4776
AsnC family transcriptional regulator.
  
     0.772
PP_4424
Uncharacterized HTH-type transcriptional regulator y4tD.
  
     0.771
PP_0663
Transcriptional regulator, AsnC family.
  
     0.768
endA
Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.764
PP_3362
Transcriptional regulator, AsnC family.
  
     0.763
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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