Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_4331Homologs of previously reported genes of unknown function. (131 aa)    
Predicted Functional Partners:
PP_4333
CheW domain protein.
 
  
 0.990
PP_4334
ParA family protein.
 
  
 0.950
PP_4332
Chemotaxis protein CheW.
 
    0.918
cheZ
Protein phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.864
flhF
Flagellar biosynthesis protein FlhF.
 
  
 0.809
PP_4336
Flagellar motor rotation protein; Function of strongly homologous gene; cell process.
  
  
 0.788
PP_2687
Homologs of previously reported genes of unknown function.
      
 0.761
flgM
Negative regulator of flagellin synthesis FlgM.
  
    0.760
PP_3007
Homologs of previously reported genes of unknown function.
     
 0.753
PP_5077
Homologs of previously reported genes of unknown function.
  
     0.750
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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