STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PP_4364Putative Anti-sigma F factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (101 aa)    
Predicted Functional Partners:
PP_4363
Sensor histidine kinase/response regulator.
 
 0.999
flgM
Negative regulator of flagellin synthesis FlgM.
  
 
  0.928
PP_4362
Homologs of previously reported genes of unknown function.
 
  
 0.916
PP_3024
Homologs of previously reported genes of unknown function.
  
 
 0.897
fliG
Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
   0.894
PP_3761
Sensor histidine kinase/response regulator.
  
  
 0.885
fliH
Flagellar assembly protein FliH.
 
    0.858
fliF
Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.851
fliK
Flagellar hook-length control protein FliK.
 
    0.832
flgJ
Peptidoglycan hydrolase FlgJ.
  
    0.811
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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