STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bkdRBkd operon transcriptional regulator; Function experimentally demonstrated in the studied species; regulator; Regulatory functions. (161 aa)    
Predicted Functional Partners:
braD
High-affinity branched-chain amino acid transport system permease protein BraD; Belongs to the binding-protein-dependent transport system permease family.
      
 0.839
bkdB
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
  
 0.821
PP_4308
Transcriptional regulator, AsnC family.
  
     0.773
PP_0384
Transcriptional regulator, AsnC family.
  
     0.767
PP_3362
Transcriptional regulator, AsnC family.
  
     0.759
rbsB
Ribose ABC transporter, periplasmic ribose-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.709
PP_3532
Transcriptional regulator, AsnC family.
  
    0.706
dctP
TRAP dicarboxylate transporter, DctP subunit.
     
 0.522
bkdAA
Branched-chain alpha-keto acid dehydrogenase complex, alpha subunit; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
     
 0.513
benR
BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism.
   
  
 0.504
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.