STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Coexpression
Experiments
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[Homology]
Score
bkdRBkd operon transcriptional regulator; Function experimentally demonstrated in the studied species; regulator; Regulatory functions. (161 aa)    
Predicted Functional Partners:
braD
High-affinity branched-chain amino acid transport system permease protein BraD; Belongs to the binding-protein-dependent transport system permease family.
      
 0.866
aotP
Arginine/ornithine transport ATP-binding protein AotP.
      
 0.814
bkdB
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
  
 0.796
PP_4308
Transcriptional regulator, AsnC family.
  
     0.773
PP_0384
Transcriptional regulator, AsnC family.
  
     0.767
PP_3362
Transcriptional regulator, AsnC family.
  
     0.759
rbsB
Ribose ABC transporter, periplasmic ribose-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.721
PP_3532
Transcriptional regulator, AsnC family.
  
     0.706
bkdAA
Branched-chain alpha-keto acid dehydrogenase complex, alpha subunit; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
     
 0.545
benR
BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism.
   
  
 0.485
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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