Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_4429Transcriptional regulator, GntR family. (466 aa)    
Predicted Functional Partners:
PP_2829
Transcriptional regulator, GntR family.
  
     0.732
PP_4432
Putative Xaa-Pro aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
 
    0.656
ocd
Ornithine cyclodeaminase 1.
 
     0.647
PP_4430
Putative threonine dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.588
PP_4428
Amino acid ABC transporter, periplasmic amino acid-binding protein.
 
     0.538
pdxY
Pyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.
  
  
 0.496
PP_4423
Homologs of previously reported genes of unknown function.
 
     0.482
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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