STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4435Homologs of previously reported genes of unknown function. (117 aa)    
Predicted Functional Partners:
dadA-I
D-amino acid dehydrogenase 1 small subunit; Oxidative deamination of D-amino acids.
 
    0.890
dadX
Alanine racemase, PLP-binding; Isomerizes L-alanine to D-alanine which is then likely oxidized to pyruvate by DadA. Shows racemase activity with both alanine stereoisomers, negligible activity with D-cysteine and L-serine, and exhibits no activity with the remaining natural chiral amino acids.
  
  
 0.779
PP_2247
Putative Endoribonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.755
PP_3496
Endoribonuclease L-PSP.
 
  
 0.730
PP_2689
Putative Endoribonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.714
ridA
Aminoacrylate/iminopropionate hydrolase/deaminase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.662
PP_3574
Homologs of previously reported genes of unknown function.
 
   
 0.559
dadA-II
D-amino-acid:quinone oxidoreductase (deaminating); Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
 
    0.543
PP_4311
Putative D-amino acid dehydrogenase 2 small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines.
 
    0.539
puuR
DNA-binding transcriptional repressor PuuR-putrescine; Function of homologous gene experimentally demonstrated in an other organism; regulator; Regulatory functions.
  
    0.496
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.