STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ooxBOpine oxidase subunit B; Function of strongly homologous gene; enzyme; Energymetabolism : Amino acids and amines. (375 aa)    
Predicted Functional Partners:
ooxA
Opine oxidase subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines.
 
 0.995
PP_1255
Putative cis-4-hydroxy-D-proline oxidase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines.
  
   
 0.954
PP_5688
Putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
    0.916
PP_4452
NAD/NADP octopine/nopaline dehydrogenase family protein.
 
  
 0.900
ocd
Ornithine cyclodeaminase 1.
 
  
 0.821
PP_4458
Putative Opine ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.819
PP_3190
Ornithine cyclodeaminase/mu-crystallin family protein.
 
  
 0.815
ocd-2
Putative ornithine cyclodeaminase; Catalyzes the conversion of L-ornithine into L-proline with release of ammonia. Is likely involved in the L-ornithine degradation pathway that allows P.putida to utilize this compound as sole carbon and nitrogen source.
  
  
 0.773
soxA
Sarcosine oxidase subunit alpha; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the GcvT family.
  
 
 0.729
amaD
D-lysine oxidase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines.
  
    0.535
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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