Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ooxBOpine oxidase subunit B; Function of strongly homologous gene; enzyme; Energymetabolism : Amino acids and amines. (375 aa)    
Predicted Functional Partners:
ooxA
Opine oxidase subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines.
 0.999
PP_1255
Putative cis-4-hydroxy-D-proline oxidase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines.
  
   
 0.980
PP_4452
NAD/NADP octopine/nopaline dehydrogenase family protein.
 
  
 0.936
PP_5688
Putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
    0.916
astA-I
Arginine N-succinyltransferase, subunit beta; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
   
 
  0.904
astA-II
Arginine N-succinyltransferase, subunit alpha; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
   
 
  0.903
speA
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
     
  0.900
aruH
Arginine--pyruvate transaminase AruH.
     
 0.900
ldcC
Lysine decarboxylase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
     
  0.900
ocd
Ornithine cyclodeaminase 1.
 
  
 0.863
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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