Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_4465Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (450 aa)    
Predicted Functional Partners:
oprC
Outer membrane copper receptor OprC.
  
   
 0.745
PP_5152
Homologs of previously reported genes of unknown function.
  
     0.640
PP_0886
Homologs of previously reported genes of unknown function.
  
     0.637
PP_1738
Homologs of previously reported genes of unknown function.
  
     0.636
PP_4911
Homologs of previously reported genes of unknown function.
  
     0.624
cmpX
CmpX protein.
  
     0.583
oprG
Outer membrane protein OprG.
      
 0.574
PP_5151
Homologs of previously reported genes of unknown function.
  
     0.544
PP_1523
Homologs of previously reported genes of unknown function.
  
     0.542
PP_1555
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
  
     0.531
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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