Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
aroP-IIAromatic amino acid transport protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aromatic amino acid family. (472 aa)    
Predicted Functional Partners:
PP_1437
Heavy metal sensor histidine kinase; Member of a two-component regulatory system.
      
 0.863
coq
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
      
 0.861
hisQ
Histidine / lysine / arginine / ornithine ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
      
 0.817
dppA-I
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
      
 0.810
dppA-II
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
      
 0.810
gltJ
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
      
 0.764
dppD
Dipeptide ABC transporter - putative ATP binding subunit; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines; Belongs to the ABC transporter superfamily.
      
 0.761
gltL
Glutamate / aspartate ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
      
 0.743
dppB
Dipeptide ABC transporter - putative membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
      
 0.711
opdC
Histidine-specific outer membrane porin D; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transportandbindingproteins : Porins.
      
 0.709
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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