Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_4509Homologs of previously reported genes of unknown function. (103 aa)    
Predicted Functional Partners:
pcaP
Putative porin-encoding gene; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.732
PP_4508
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Transcription.
  
    0.718
PP_2326
Universal stress protein.
   
    0.604
yeaE
Methylglyoxal reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
   
    0.504
PP_4506
Nitroreductase family protein.
       0.473
PP_4634
Putative hydrolase, alpha/beta fold family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.443
PP_2308
Putative Acyl-CoA thioesterase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.441
ldh
Leucine dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
    0.438
PP_4972
Homologs of previously reported genes of unknown function.
  
    0.419
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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