Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_4517Homologs of previously reported genes of unknown function; Belongs to the UPF0149 family. (195 aa)    
Predicted Functional Partners:
PP_4518
Homologs of previously reported genes of unknown function; Mobileandextrachromosomalelementfunctions : Prophage functions.
       0.869
PP_1523
Homologs of previously reported genes of unknown function.
  
     0.774
recQ
ATP-dependent DNA 3' to 5' helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNA metabolism.
  
    0.715
PP_1600
Skp-like protein.
  
     0.713
PP_2015
Homologs of previously reported genes of unknown function.
  
     0.694
dgt
Deoxyguanosinetriphosphate triphosphohydrolase-like protein.
  
     0.687
PP_2166
Anti-anti-sigma factor.
  
     0.645
PP_0938
Homologs of previously reported genes of unknown function.
  
     0.640
PP_4515
Transcriptional regulator, MarR family.
       0.630
mucA
Sigma factor AlgU negative regulatory protein.
  
     0.615
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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