STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mscMBMechanosensitive channel of miniconductance; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins. (433 aa)    
Predicted Functional Partners:
PP_1728
Homologs of previously reported genes of unknown function.
      
 0.902
PP_1353
Homologs of previously reported genes of unknown function.
      
 0.880
PP_5256
Cyclic nucleotide-binding protein.
  
  
 0.876
PP_0707
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.870
PP_2741
Homologs of previously reported genes of unknown function.
      
 0.862
kefA
Mechanosensitive channel protein, intermediate (smaller, MscS-like) conductance, K+ efflux; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
  
 0.782
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
     
 0.743
oprE
Outer-membrane porin E; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.741
oprC
Outer membrane copper receptor OprC.
  
   
 0.741
oprI
Major outer membrane lipoprotein.
      
 0.653
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.