STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4539Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
ppiA
Peptidyl-prolyl cis-trans isomerase A (rotamase A); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
    0.831
PP_4540
Hydrolase, alpha/beta fold family.
  
    0.752
PP_4542
Putative ABC transporter, ATP-binding protein/permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.603
PP_5698
Homologs of previously reported genes of unknown function; Unknown function.
       0.600
PP_1984
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.589
azoR2
FMN-dependent NADH-azoreductase 2; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
 
     0.539
PP_0371
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.528
PP_3179
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.471
cysB
Transcriptional dual regulator / CysB-O-acetyl-L-serine; Function of homologous gene experimentally demonstrated in an other organism; regulator; Aminoacidbiosynthesis : Serine family; Belongs to the LysR transcriptional regulatory family.
  
    0.468
PP_2210
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.461
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.