STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4552Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (156 aa)    
Predicted Functional Partners:
PP_0301
betainyl-CoA thiolase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
      
 0.835
fabA
3R-3-hydroxydecanoyl acyl carrier protein (ACP) dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.
      
 0.720
PP_4551
Hydrolase, alpha/beta fold family.
       0.709
fatB
Ferric anguibactin-binding protein.
      
 0.648
paaI
hydroxyphenylacetyl-CoA thioesterase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
  
  
 0.606
fadB
enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 0.597
paaG
1,2-epoxyphenylacetyl-CoA isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
 
 0.487
katE
Hydroperoxidase - self catalytic heme d synthase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.479
katA
Catalase; Belongs to the catalase family.
   
 0.479
PP_2887
Catalase-related peroxidase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.479
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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