Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_4555Homologs of previously reported genes of unknown function. (114 aa)    
Predicted Functional Partners:
PP_4553
RNA polymerase sigma-70 factor, ECF subfamily.
 
  
 0.959
PP_4556
Homologs of previously reported genes of unknown function.
 
    0.864
PP_4554
Homologs of previously reported genes of unknown function.
 
     0.855
PP_2851
Homologs of previously reported genes of unknown function.
 
    0.723
PP_3444
Glyoxalase family protein.
 
    0.597
PP_3629
Homologs of previously reported genes of unknown function.
 
    0.592
PP_2653
Transcriptional regulator, Cro/CI family.
  
     0.401
PP_4557
Homologs of previously reported genes of unknown function.
  
    0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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