Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
csbDStress response protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Adaptations to atypical conditions; Belongs to the UPF0337 (CsbD) family. (59 aa)    
Predicted Functional Partners:
PP_0135
Homologs of previously reported genes of unknown function; Unknown function.
  
  
 0.908
PP_2121
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
    0.804
PP_2345
Homologs of previously reported genes of unknown function.
      
 0.767
PP_2346
Homologs of previously reported genes of unknown function.
      
 0.767
dppF
Dipeptide ABC transporter, binding subunit; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines; Belongs to the ABC transporter superfamily.
      
 0.765
PP_0134
Homologs of previously reported genes of unknown function.
  
    0.746
PP_4707
OsmY-related protein.
  
    0.746
dgkA-II
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
      
 0.656
dppC
Dipeptide ABC transporter - putative membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
      
 0.652
PP_4560
Putative Ribonuclease BN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.644
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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