PP_4608 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP_4608

RNA polymerase sigma-70 factor, ECF subfamily. (191 aa)

Predicted Functional Partners:

PP_4607

0.958

PP_4612

0.894

PP_4611

0.885

PP_4610

0.842

PP_1007

0.821

PP_4609

0.820

PP_5699

0.820

PP_0866

0.811

PP_3555

0.807

PP_0700

0.804

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PP_0700	PP_4608	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.804
PP_0700	PP_4611	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.828
PP_0700	PP_4612	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative FecR protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.535
PP_0866	PP_4608	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.811
PP_0866	PP_4611	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.823
PP_1007	PP_4608	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.821
PP_1007	PP_4611	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.823
PP_3555	PP_4608	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.807
PP_3555	PP_4610	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved protein of unknown function containing PepSY-associated TM helix domain; Homologs of previously reported genes of unknown function; Unknown function.	0.426
PP_3555	PP_4611	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.823
PP_4607	PP_4608	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.958
PP_4607	PP_4609	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.815
PP_4607	PP_4610	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved protein of unknown function containing PepSY-associated TM helix domain; Homologs of previously reported genes of unknown function; Unknown function.	0.831
PP_4607	PP_4611	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	RNA polymerase sigma-70 factor, ECF subfamily.	0.913
PP_4607	PP_4612	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative FecR protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.672
PP_4607	PP_5699	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative iron uptake protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transportandbindingproteins : Cations and iron carrying compounds.	0.813
PP_4608	PP_0700	RNA polymerase sigma-70 factor, ECF subfamily.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.804
PP_4608	PP_0866	RNA polymerase sigma-70 factor, ECF subfamily.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.811
PP_4608	PP_1007	RNA polymerase sigma-70 factor, ECF subfamily.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.821
PP_4608	PP_3555	RNA polymerase sigma-70 factor, ECF subfamily.	Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.807