Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_4611RNA polymerase sigma-70 factor, ECF subfamily. (170 aa)    
Predicted Functional Partners:
PP_4612
Putative FecR protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.958
PP_2590
Outer membrane ferric siderophore receptor.
  
  
 0.944
PP_4606
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.929
PP_4607
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.913
PP_4608
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.889
PP_3576
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.846
PP_3085
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.841
PP_0700
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.835
PP_0351
Putative Transmembrane sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.831
PP_0161
Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   0.829
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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