STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4615Homologs of previously reported genes of unknown function; Belongs to the PsiE family. (156 aa)    
Predicted Functional Partners:
PP_3331
Homologs of previously reported genes of unknown function.
      
 0.930
PP_3332
Putative cytochrome c-type protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
      
 0.930
PP_5701
Conserved protein of unknown function; Doubtful CDS.
       0.549
PP_4176
Putative 5-oxo-L-prolinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.509
PP_4792
Homologs of previously reported genes of unknown function.
  
    0.482
PP_4684
Conserved protein of unknown function with kinase-like domain; Homologs of previously reported genes of unknown function; Unknown function.
 
    0.441
PP_4616
Homologs of previously reported genes of unknown function.
  
  
 0.425
envZ
Osmolarity sensor protein EnvZ.
  
   
 0.421
PP_0330
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.408
rpoD
RNA polymerase, sigma 70 (sigma D) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.403
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.