STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cidBAnti-holin regulator of holin CidA; Function of homologous gene experimentally demonstrated in an other organism; regulator. (228 aa)    
Predicted Functional Partners:
cidA
Holin regulator of murein hydrolases; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.983
PP_4816
Homologs of previously reported genes of unknown function.
 
  
 0.843
cidR
Transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.752
mnxG
Manganese-oxidizing multicopper oxidase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
      
 0.738
flgK
Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.
      
 0.483
flgL
Flagellar hook-associated protein FlgL.
   
  
 0.481
PP_4624
Putative hydrolase, alpha/beta fold family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
       0.458
motB
Flagellar motor rotation protein; Function of homologous gene experimentally demonstrated in an other organism; cell process; Transport and binding proteins.
     
 0.443
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.