STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4628Homologs of previously reported genes of unknown function. (151 aa)    
Predicted Functional Partners:
PP_5702
Homologs of previously reported genes of unknown function.
       0.692
PP_0860
Putative Sulfite reductase, flavoprotein component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.551
PP_4629
Sensory box protein.
       0.539
folM
Dihydrofolate reductase / dihydromonapterin reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesis of cofactors, prosthetic groups, and carriers.
  
    0.500
PP_4859
Transcriptional regulator, TetR family.
  
    0.498
PP_2739
Putative Sensory box protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.488
PP_5703
Putative type 3 effector HopPmaJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
       0.455
PP_4331
Homologs of previously reported genes of unknown function.
  
    0.430
PP_0532
Homologs of previously reported genes of unknown function.
  
    0.408
pheA
Chorismate mutase/Prephenate dehydratase; Function of strongly homologous gene; enzyme.
     
 0.404
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.