Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_4633Conserved protein of unknown function, DUF1244 family; Homologs of previously reported genes of unknown function; Unknown function. (98 aa)    
Predicted Functional Partners:
PP_5703
Putative type 3 effector HopPmaJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
      0.949
folM
Dihydrofolate reductase / dihydromonapterin reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesis of cofactors, prosthetic groups, and carriers.
  
    0.859
dctB
C4-dicarboxylate transport sensor protein.
      
 0.851
PP_4631
Homologs of previously reported genes of unknown function.
       0.684
moaB-I
Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
 
    0.659
moaB-II
Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
 
    0.657
ctpL
Methyl-accepting chemotaxis protein CtpL.
      
 0.549
ctpH
Methyl-accepting chemotaxis protein CtpH.
      
 0.520
PP_4630
Transcriptional regulator, MerR family.
       0.500
PP_0984
Homologs of previously reported genes of unknown function.
       0.488
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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