STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zinUP-loop guanosine triphosphatase-dependent zinc chaperone; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Heme, porphyrin, and cobalamin. (323 aa)    
Predicted Functional Partners:
PP_4640
Homologs of previously reported genes of unknown function; Unknown function.
  
 0.934
yjiY
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Cellularprocesses : Adaptations to atypical conditions.
 
  
 0.835
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.547
folEB
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.531
PP_5360
Homologs of previously reported genes of unknown function.
 
  
 0.508
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.491
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.487
PP_3801
Putative Cation ABC transporter, periplasmic cation-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.466
PP_3804
Homologs of previously reported genes of unknown function.
  
  
 0.455
PP_2220
C4-type zinc finger protein, DksA/TraR family.
  
  
 0.450
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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