Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yjiYPutative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Cellularprocesses : Adaptations to atypical conditions. (688 aa)    
Predicted Functional Partners:
PP_4640
Homologs of previously reported genes of unknown function; Unknown function.
 
  
 0.992
zinU
P-loop guanosine triphosphatase-dependent zinc chaperone; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Heme, porphyrin, and cobalamin.
 
  
 0.835
PP_4642
Cyclic diguanosine monophosphate-binding protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.
  
    0.544
PP_3124
Putative short chain fatty acid transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.527
PP_3444
Glyoxalase family protein.
  
    0.442
rbsA-I
Ribose ABC transporter - ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
  
 0.424
rbsA-II
Ribose ABC transporter - ATP-binding subunit; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   
  
 0.424
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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