STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4643Xanthine/uracil permease family protein. (505 aa)    
Predicted Functional Partners:
PP_3009
Homologs of previously reported genes of unknown function.
      
 0.836
PP_3656
Putative Aromatic compound-specific porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.836
bhbP
D-beta-hydroxybutyrate permease; Function of strongly homologous gene; transporter; Transport and binding proteins.
   
  
 0.822
PP_3420
Sensor histidine kinase.
      
 0.822
PP_2810
Homologs of previously reported genes of unknown function.
      
 0.751
argT
Lysine / arginine / ornithine ABC transporter - periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
   
  
 0.740
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
 0.710
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.695
PP_4309
Transporter, NCS1 nucleoside transporter family.
 
  
 0.669
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
  
  
 0.659
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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