Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ypfJZinc metalloprotease; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknown function. (316 aa)    
Predicted Functional Partners:
PP_5334
Homologs of previously reported genes of unknown function.
  
  
 0.672
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
      0.647
PP_0092
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
      
 0.579
PP_1372
Homologs of previously reported genes of unknown function.
 
     0.578
ycfJ
Putative regulator of flagellation; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Unknown function.
      
 0.575
PP_1202
Putative enzyme involved in modification of phospholipids; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.558
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
  
    0.541
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
       0.538
dapA-I
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
      0.482
yedI
Conserved inner membrane protein; Homologs of previously reported genes of unknown function; putative membrane component; Unknown function.
 
     0.477
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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