STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TpbBDiguanylate cyclase; Function experimentally demonstrated in the studied genus; enzyme; Regulatory functions. (423 aa)    
Predicted Functional Partners:
PP_3672
Homologs of previously reported genes of unknown function.
  
 0.982
PP_3435
Homologs of previously reported genes of unknown function.
  
 0.972
PP_0131
Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.971
PP_1718
Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
 0.952
PP_4671
Homologs of previously reported genes of unknown function.
 
  
 0.936
PP_4669
OmpA family protein.
  
 0.905
PP_3759
Methylesterase, CheB-like.
 
  
 0.874
PP_2739
Putative Sensory box protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
   0.859
pilH
Protein PilH.
 
 
    0.823
PP_4629
Sensory box protein.
 
 
  
 0.806
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.