PP_4797 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

PP_4797

Homologs of previously reported genes of unknown function. (54 aa)

Predicted Functional Partners:

rpsU

0.863

rplQ

0.860

rpsO

0.860

rpmF

0.859

rplX

0.854

rpmI

0.854

rplT

0.854

rplW

0.853

rplR

0.853

rpsD

0.853

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_4797	rplQ	PP_4797	PP_0480	Homologs of previously reported genes of unknown function.	50S ribosomal protein L17.	0.860
PP_4797	rplR	PP_4797	PP_0470	Homologs of previously reported genes of unknown function.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.853
PP_4797	rplT	PP_4797	PP_2468	Homologs of previously reported genes of unknown function.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.854
PP_4797	rplW	PP_4797	PP_0456	Homologs of previously reported genes of unknown function.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.853
PP_4797	rplX	PP_4797	PP_0465	Homologs of previously reported genes of unknown function.	50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.854
PP_4797	rpmF	PP_4797	PP_1911	Homologs of previously reported genes of unknown function.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.859
PP_4797	rpmI	PP_4797	PP_2467	Homologs of previously reported genes of unknown function.	50S ribosomal subunit protein L35; Function of homologous gene experimentally demonstrated in an other organism; structure; Proteinsynthesis : Ribosomal proteins; Belongs to the bacterial ribosomal protein bL35 family.	0.854
PP_4797	rpsD	PP_4797	PP_0478	Homologs of previously reported genes of unknown function.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.853
PP_4797	rpsO	PP_4797	PP_4709	Homologs of previously reported genes of unknown function.	30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.860
PP_4797	rpsU	PP_4797	PP_0389	Homologs of previously reported genes of unknown function.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.863
rplQ	PP_4797	PP_0480	PP_4797	50S ribosomal protein L17.	Homologs of previously reported genes of unknown function.	0.860
rplQ	rplR	PP_0480	PP_0470	50S ribosomal protein L17.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.998
rplQ	rplT	PP_0480	PP_2468	50S ribosomal protein L17.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplQ	rplW	PP_0480	PP_0456	50S ribosomal protein L17.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplQ	rplX	PP_0480	PP_0465	50S ribosomal protein L17.	50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999
rplQ	rpmF	PP_0480	PP_1911	50S ribosomal protein L17.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.997
rplQ	rpmI	PP_0480	PP_2467	50S ribosomal protein L17.	50S ribosomal subunit protein L35; Function of homologous gene experimentally demonstrated in an other organism; structure; Proteinsynthesis : Ribosomal proteins; Belongs to the bacterial ribosomal protein bL35 family.	0.993
rplQ	rpsD	PP_0480	PP_0478	50S ribosomal protein L17.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rplQ	rpsO	PP_0480	PP_4709	50S ribosomal protein L17.	30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.997
rplQ	rpsU	PP_0480	PP_0389	50S ribosomal protein L17.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.970