Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_4798Putative Membrane-bound lytic murein transglycosylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (438 aa)    
Predicted Functional Partners:
yeaD
Putative glucose-6-phosphate 1-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energy metabolism; Belongs to the glucose-6-phosphate 1-epimerase family.
 
      0.899
PP_5332
Homologs of previously reported genes of unknown function; Belongs to the glucose-6-phosphate 1-epimerase family.
 
      0.894
PP_4797
Homologs of previously reported genes of unknown function.
  
    0.781
PP_2213
Putative acyl-CoA synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.706
holA
DNA polymerase III, delta subunit.
  
    0.654
lptE
Putative Lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
    0.631
leuS
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.609
PP_3926
Short-chain dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
      
 0.562
maa
Maltose acetyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cellularprocesses : Detoxification.
      
 0.549
PP_4793
Homologs of previously reported genes of unknown function.
  
    0.547
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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