Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
PP_4814ATP-dependent protease La domain protein. (197 aa)    
Predicted Functional Partners:
PP_4816
Homologs of previously reported genes of unknown function.
       0.869
PP_4815
Putative Membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.818
PP_4817
MaoC domain protein.
   
   0.561
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.535
PP_0550
Homologs of previously reported genes of unknown function.
  
    0.516
PP_0551
MORN domain protein.
       0.488
PP_0741
Homologs of previously reported genes of unknown function; Unknown function.
     
 0.479
PP_4819
Homologs of previously reported genes of unknown function.
       0.443
PP_0202
CBS domain-containing protein.
   
   0.428
PP_3006
RNA polymerase sigma-70 factor, ECF subfamily.
     
 0.428
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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