Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_4816Homologs of previously reported genes of unknown function. (122 aa)    
Predicted Functional Partners:
PP_4815
Putative Membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.977
PP_4814
ATP-dependent protease La domain protein.
       0.869
cidB
Anti-holin regulator of holin CidA; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.860
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
    0.537
PP_4817
MaoC domain protein.
       0.536
PP_0551
MORN domain protein.
     
 0.513
PP_0550
Homologs of previously reported genes of unknown function.
       0.488
PP_4911
Homologs of previously reported genes of unknown function.
  
    0.478
PP_0347
Homologs of previously reported genes of unknown function.
  
     0.464
PP_4819
Homologs of previously reported genes of unknown function.
  
    0.460
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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