STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4817MaoC domain protein. (151 aa)    
Predicted Functional Partners:
PP_5210
Alcohol dehydrogenase, zinc-containing.
 
 0.940
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
    0.775
PP_4819
Homologs of previously reported genes of unknown function.
  
    0.634
PP_1720
Alcohol dehydrogenase, zinc-containing.
 
 0.616
PP_2437
Putative Acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.600
PP_4815
Putative Membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.567
PP_4814
ATP-dependent protease La domain protein.
   
   0.564
PP_4816
Homologs of previously reported genes of unknown function.
  
    0.540
PP_3925
Homologs of previously reported genes of unknown function.
 
 
 0.516
PP_2791
Aminoglycoside phosphotransferase.
 
 
 0.512
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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