dusB protein (Pseudomonas putida KT2440) - STRING interaction network

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dusB

tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (337 aa)

Predicted Functional Partners:

PP_4821

0.996

prmA

0.920

tsaE

0.895

rlmB

0.892

trmK

0.888

rarA

0.883

PP_1779

0.863

truA

0.863

PP_0165

0.853

yijP

0.821

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_0165	PP_1779	PP_0165	PP_1779	GGDEF domain protein.	Lipopolysaccharide ABC export system, ATP-binding protein.	0.897
PP_0165	dusB	PP_0165	PP_4820	GGDEF domain protein.	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	0.853
PP_0165	rarA	PP_0165	PP_4002	GGDEF domain protein.	DNA-dependent ATPase required for recombination; Function experimentally demonstrated in the studied strain; cell process; DNAmetabolism : DNA replication, recombination, and repair.	0.531
PP_0165	yijP	PP_0165	PP_2579	GGDEF domain protein.	Putative phosphoethanolamine transferase CptA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.851
PP_1779	PP_0165	PP_1779	PP_0165	Lipopolysaccharide ABC export system, ATP-binding protein.	GGDEF domain protein.	0.897
PP_1779	dusB	PP_1779	PP_4820	Lipopolysaccharide ABC export system, ATP-binding protein.	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	0.863
PP_1779	rarA	PP_1779	PP_4002	Lipopolysaccharide ABC export system, ATP-binding protein.	DNA-dependent ATPase required for recombination; Function experimentally demonstrated in the studied strain; cell process; DNAmetabolism : DNA replication, recombination, and repair.	0.657
PP_1779	yijP	PP_1779	PP_2579	Lipopolysaccharide ABC export system, ATP-binding protein.	Putative phosphoethanolamine transferase CptA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.870
PP_4821	dusB	PP_4821	PP_4820	Putative Fis-like DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	0.996
PP_4821	prmA	PP_4821	PP_4818	Putative Fis-like DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.	Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.	0.941
dusB	PP_0165	PP_4820	PP_0165	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	GGDEF domain protein.	0.853
dusB	PP_1779	PP_4820	PP_1779	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	Lipopolysaccharide ABC export system, ATP-binding protein.	0.863
dusB	PP_4821	PP_4820	PP_4821	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	Putative Fis-like DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.	0.996
dusB	prmA	PP_4820	PP_4818	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.	0.920
dusB	rarA	PP_4820	PP_4002	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	DNA-dependent ATPase required for recombination; Function experimentally demonstrated in the studied strain; cell process; DNAmetabolism : DNA replication, recombination, and repair.	0.883
dusB	rlmB	PP_4820	PP_4879	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.	0.892
dusB	trmK	PP_4820	PP_3495	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	tRNA (adenine(22)-N(1))-methyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Construct biomass (Anabolism).	0.888
dusB	truA	PP_4820	PP_1994	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	tRNA pseudouridine (38-40)synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.863
dusB	tsaE	PP_4820	PP_4898	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	ATPase; Function of strongly homologous gene; enzyme; Unknownfunction : Enzymes of unknown specificity.	0.895
dusB	yijP	PP_4820	PP_2579	tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.	Putative phosphoethanolamine transferase CptA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.821

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