STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cycAD-alanine, beta-alanine, D-serine, glycine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Biologicalprocesses : Circulate. (468 aa)    
Predicted Functional Partners:
sdaC
serine:H+ symport permease, threonine-insensitive; Function of strongly homologous gene; transporter; Aminoacidbiosynthesis : Serine family.
      
 0.835
PP_1576
Putative Immunity protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.738
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
      
 0.737
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
      
 0.649
ilvE
Branched-chain-amino-acid aminotransferase.
      
 0.514
PP_4839
Putative iron-regulated membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
       0.444
urtA
Putative Urea ABC transporter, periplasmic protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins.
       0.422
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.