STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urtAPutative Urea ABC transporter, periplasmic protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins. (421 aa)    
Predicted Functional Partners:
urtC
Putative Urea ABC transporter, permease protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
urtD
Putative Urea ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins.
 
 
 0.998
urtE
Putative Urea ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins.
 
 
 0.998
urtB
Putative Urea ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.973
ureF
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.920
ureE
Urease accessory protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.889
ureC
Urease subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 
   
 0.887
ureJ
Urease accessory protein UreJ.
     
 0.808
ureB
Urease subunit beta; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the urease beta subunit family.
 
   
 0.756
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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