Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
urtBPutative Urea ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins; Belongs to the binding-protein-dependent transport system permease family. (495 aa)    
Predicted Functional Partners:
urtC
Putative Urea ABC transporter, permease protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
urtD
Putative Urea ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins.
 
 0.999
urtA
Putative Urea ABC transporter, periplasmic protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins.
 
 
 0.997
urtE
Putative Urea ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; Transport and binding proteins.
 
 
 0.995
PP_0617
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.977
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.878
PP_0616
Branched-chain amino acid ABC transporter, ATP binding protein.
  
 0.842
ureB
Urease subunit beta; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the urease beta subunit family.
 
   
 0.819
ureE
Urease accessory protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.794
ureF
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.748
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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