STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4850Homologs of previously reported genes of unknown function; Unknown function. (355 aa)    
Predicted Functional Partners:
PP_4851
Phosphate starvation-inducible protein, PSIF.
  
    0.776
PP_4852
Transcriptional regulator, AraC family.
  
    0.682
PP_4703
Homologs of previously reported genes of unknown function.
 
     0.461
PP_1202
Putative enzyme involved in modification of phospholipids; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.457
oprB-II
Carbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter.
  
     0.440
PP_4853
Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
    0.431
PP_0242
Transcriptional regulator, TetR family.
  
     0.430
PP_5276
Phospholipase D family protein.
 
     0.424
oprB-III
Carbohydrate-selective porin; Function of strongly homologous gene; transporter; Transport and binding proteins.
  
     0.415
pchP
Phosphoethanolamine/phosphocholine phosphatase; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
    0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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