Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lipLipase. (315 aa)    
Predicted Functional Partners:
dgkA-I
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
     
 0.904
dgkA-II
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
     
 0.904
fadD-I
long-chain-fatty-acid/CoA ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
   
 
 0.808
fadD-II
long-chain-fatty-acid/CoA ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.808
PP_4855
Osmotically-inducible lipoprotein OsmE.
       0.556
PP_2083
Putative Lipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.548
PP_5119
Transcriptional regulator, TetR family.
  
   
 0.506
PP_4856
Ferritin, Dps family protein.
       0.477
PP_2474
Glutathione S-transferase family protein; Belongs to the GST superfamily.
  
     0.473
PP_4165
Homologs of previously reported genes of unknown function.
  
  
 0.457
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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