STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livF-IIHigh-affinity branched-chain amino acid transporter, ATP-binding; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily. (238 aa)    
Predicted Functional Partners:
braE
High-affinity branched-chain amino acid transport system permease protein BraE; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
PP_0617
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
livM
Branched chain amino acid transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Pyruvate family; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
PP_2769
Putative Branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
braD
High-affinity branched-chain amino acid transport system permease protein BraD; Belongs to the binding-protein-dependent transport system permease family.
  
 0.978
PP_2750
Putative Branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
 
 0.975
PP_4867
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like); Function of strongly homologous gene; transporter; Transport and binding proteins.
 
  
 0.924
braF
High-affinity branched-chain amino acid transport ATP-binding protein BraF.
 
  
0.908
livK
Branched-chain amino acids ABC transporter - periplasmic leucine binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Pyruvate family.
 
  
 0.887
livH
Branched chain amino acid transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Pyruvate family; Belongs to the binding-protein-dependent transport system permease family.
  
 0.883
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.