STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_4911Homologs of previously reported genes of unknown function. (251 aa)    
Predicted Functional Partners:
PP_4916
Putative esterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
     0.733
PP_2577
Putative paraquat-inducible protein B (pqiB like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process; Cellularprocesses : Detoxification.
 
   
 0.711
PP_2030
Homologs of previously reported genes of unknown function.
  
     0.708
PP_0598
Paraquat-inducible protein A; Function of strongly homologous gene; cell process.
 
  
 0.698
PP_5745
Paraquat-inducible protein A; Function of strongly homologous gene; cell process.
 
  
 0.686
PP_1738
Homologs of previously reported genes of unknown function.
  
     0.676
PP_0599
Paraquat-inducible protein B; Function of strongly homologous gene; phenotype; Unknown function.
 
   
 0.648
PP_2852
Putative Sulfatase domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.629
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
       0.628
PP_4465
Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.624
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.